Coding

Part:BBa_K4998022

Designed by: Rafail Andreou   Group: iGEM23_thessaloniki   (2023-10-09)


LuxR gene

Usage and Biology

This part consists of the LuxR gene, which expresses a 251 amino acid protein. LuxR is a gene that takes part in the Lux operon since the protein it expresses operates as a regulatory agent, originating from Vibrio fischeri. The protein is expressed constantly and has the ability to bind to AHL (N-Acyl homoserine lactone) thus taking part in quorum sensing systems. [1] In our project, Euphoresis, we transfer the LuxR gene in a plasmid vector to a cyanobacterium strain, Nostoc oryzae TAU-MAC 2710. The protein that is produced binds to AHL, a signal molecule that in our quorum sensing system is expressed be a strain of B.subtilis, and the product acts as a transcription regulator of an antitoxin gene. The antitoxin that is expressed creates clumps with a constitutively expressed toxin and keeps the cyanobacterium alive. With the death of the B.subtilis strain, AHL production is stopped and the kill-switch mechanism of the cyanobacterium is activated.


Sequence and Features


Assembly Compatibility:
  • 10
    COMPATIBLE WITH RFC[10]
  • 12
    COMPATIBLE WITH RFC[12]
  • 21
    COMPATIBLE WITH RFC[21]
  • 23
    COMPATIBLE WITH RFC[23]
  • 25
    COMPATIBLE WITH RFC[25]
  • 1000
    INCOMPATIBLE WITH RFC[1000]
    Illegal BsaI site found at 349


Characterization

References

[1] Kokarakis, E. J., Rillema, R., Ducat, D. C., & Sakkos, J. K. (2022). Developing cyanobacterial quorum sensing toolkits: Toward interspecies coordination in mixed autotroph/heterotroph communities. ACS Synthetic Biology, 12(1), 265–276. https://doi.org/10.1021/acssynbio.2c00527

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Categories
Parameters
None